Public profile
Research areas
Todd Treangen's research interests lie at the intersection of computer science and genomics, and is focused on the development of novel algorithms, methods, and software for the analysis of genomes and metagenomes.
Computer Science
Todd Treangen
Associate Professor of Computer Science
Member, Ken Kennedy Institute
Average rating
3.5
5 temporary mock ratings
Difficulty
3.3
course-linked average
Courses
7
in seeded sections
Courses taught
BIOE 500
Graduate Research
Repeatable for Credit.
BioengineeringNone1-15 credits
4.08.2hAjo-Franklin, Caroline, Azhang, Behnam, Bao, Gang, Bashor, Caleb, Butts, Jessica, Dai, Mingjie, Diehl, Michael, Drezek, Rebekah, Farach-Carson, Cindy, Gao, Yang, Grande-Allen, K. Jane, Harrington, Daniel, Hilton, Isaac, Igoshin, Oleg, Kalluri, Raghu, King, Michael, Kirienko, Natasha, Lavery, Laura, Lillehoj, Peter, Lu, George, Luan, Lan, McGinley, Matthew, McHugh, Kevin, Mikos, Antonios, Nash, Amanda, Provenza, Nicole, Raphael, Rob, Reinhart-King, Cynthia, Richards-Kortum, Rebecca, Robinson, Jacob, Segatori, Laura, Sempionatto Moreto, Juliane, Shah, Nishal, Silberg, Joff, Sokolov, Konstantin, Swingle, Kelsey, Szablowski, Jerzy, Tabor, Jeffrey, Tandon, Nitin, Tao, Yizhi, Thyer, Ross, Tkaczyk, Tomasz, Treangen, Todd, Tringides, Christina, Veiseh, Omid, Vlassakis, Julea, Wettergreen, Matthew, Wong, Stephen T., Xie, Chong
COMP 390
Computer Science Projects
Theoretical and experimental investigations under staff direction. Repeatable for Credit.
Computer ScienceNone1-3 credits
4.26.2hAliakbarpour, Maryam, Chen, Hanjie, Chen, Ken, Cox, Alan L., Cutler, Scott, Ferreira Flores, Rodrigo, Hang, Kaiyu, Johnson, Dave, Kavraki, Lydia, Kyrillidis, Tasos, Lopes da Silva, Arlei, Myers, Risa, Nakhleh, Luay, Ng, T. S. Eugene, Patel, Tirthak, Sano, Akane, Schreib, Rebecca, Sedlazeck, Fritz, Subramanian, Devika, Treangen, Todd, Unhelkar, Vaibhav, Vardi, Moshe, Veeraraghavan, Ashok, Warren, Joe D., Wong, Stephen
COMP 416
Genome-Scale Algorithms
Since the advent of Sanger Sequencing in 1977, computer scientists have devised algorithms and software tools to interpret and analyze DNA sequences. The field of bioinformatics focuses on computational approaches to solving biological questions. This course serves both as an introduction to widely used algorithms in bioinformatics and a software design course. The class involves a semester-long software design and implementation project, emphasizing design patterns and high-performance computing. No prior knowledge of biology is assumed nor required. Cross-list: COMP 519. Mutually Exclusive: Cannot register for COMP 416 if student has credit for COMP 519.
Computer ScienceNone4 credits
3.011.2hSedlazeck, Fritz, Treangen, Todd
COMP 519
Genome-Scale Algorithms
Since the advent of Sanger Sequencing in 1977, computer scientists have been devising algorithms and software tools to interpret and analyze DNA sequences. The field of bioinformatics focuses on computational approaches to solving biological questions. This course will serve as an introduction to widely used algorithms in bioinformatics used for pattern searching, genome assembly, sequence alignment, and clustering of biological data. No prior knowledge of biology is assumed. The class involves several programming assignments. Cross-list: COMP 416. Mutually Exclusive: Cannot register for COMP 519 if student has credit for COMP 416.
Computer ScienceNone3 credits
3.611.9hSedlazeck, Fritz, Treangen, Todd
COMP 590
Computer Science Projects
Advanced theoretical and experimental investigations under staff direction. The student must have a full-time internship to receive 4 credits for this course. Repeatable for Credit.
Computer ScienceNone1-4 credits
3.45.7hAliakbarpour, Maryam, Baraniuk, Richard G, Chen, Hanjie, Chia, Nai-Hui, Cox, Alan L., Fallah, Alireza, Goldman, Ron, Hang, Kaiyu, Jermaine, Christopher, Joyner, Mack, Kavraki, Lydia, Kyrillidis, Tasos, Lopes da Silva, Arlei, Mamouras, Konstantinos, Mellor-Crummey, John, Myers, Risa, Nakhleh, Luay, Ng, T. S. Eugene, Ordonez Roman, Vicente, Patel, Ankit, Patel, Tirthak, Rixner, Scott, Shrivastava, Anshumali, Simar, Ray, Treangen, Todd, Unhelkar, Vaibhav, Vardi, Moshe, Wang, Yuke, Warren, Joe D., Wei, Chen, Wong, Stephen, Xing, Jiarong, Yao, Vicky
COMP 800
Graduate Research
Repeatable for Credit.
Computer ScienceNone1-15 credits
4.28.5hAliakbarpour, Maryam, Braverman, Vladimir, Chen, Hanjie, Chia, Nai-Hui, Cooper, Keith, Cox, Alan L., Fallah, Alireza, Goldman, Ron, Hang, Kaiyu, Hu, Ben, Jermaine, Christopher, Johnson, Dave, Kavraki, Lydia, Kyrillidis, Tasos, Lopes da Silva, Arlei, Mamouras, Konstantinos, Mellor-Crummey, John, Nakhleh, Luay, Ng, T. S. Eugene, Ordonez Roman, Vicente, Patel, Ankit, Patel, Tirthak, Phillips, George, Rixner, Scott, Shrivastava, Anshumali, Subramanian, Devika, Treangen, Todd, Unhelkar, Vaibhav, Vardi, Moshe, Varman, Peter, Wallach, Dan S., Wang, Yuke, Warren, Joe D., Wei, Chen, Xing, Jiarong, Yao, Vicky
SSPB 800
Graduate Research
Graduate students will conduct independent research/thesis project under the direction of their advisor. Repeatable for Credit.
Systems/Synthetic/Phys BiologyNone1-15 credits
3.35.8hAjo-Franklin, Caroline, Alvarez, Pedro, An, Linna, Bao, Gang, Bashor, Caleb, Bennett, Matthew, Butts, Jessica, Chappell, James, Dai, Mingjie, de Moraes, Marcos, Diehl, Michael, Gao, Yang, Glasscock, Cameron, Gollihar, Jimmy, Gustavsson, Anna-Karin, Hilton, Isaac, Igoshin, Oleg, Iyer, Harini, Kalluri, Raghu, Kavraki, Lydia, Kiang, Ching-Hwa, Kimmel, Marek, Kirienko, Natasha, Kolomeisky, Anatoly, Lavery, Laura, Li, Lei, Lieberman-Aiden, Erez, Loveless, Theresa, Lu, George, Luan, Lan, Ma, Yuan, MacKintosh, Frederick, Masiello, Carrie, Mou, Quanbing, Nakhleh, Luay, Nikonowicz, Edward, Onuchic, Jose, Phillips, George, Raphael, Rob, Renata, Hans, Robinson, Jacob, Segatori, Laura, Shamoo, Yousif, Silberg, Joff, St. Pierre, Francois, Stadler, Lauren, Szablowski, Jerzy, Tabor, Jeffrey, Tang, Evelyn, Tao, Yizhi, Thyer, Ross, Treangen, Todd, Uribe, Rosa, Veiseh, Omid, Vlassakis, Julea, Warmflash, Aryeh, Wolynes, Peter, Xiao, Han, Xie, Chong, Yao, Vicky